Genbank Information for Homo sapiensCollagen
LOCUS HUMCO 6378 bp mRNA PRI 15-SEP-1994
DEFINITION Human mRNA for collagen.
ACCESSION D21337 NID g466537
KEYWORDS collagen.
SOURCE Homo sapiens male and female (library: whole eye and kidney) cDNA to mRNA, clones MS[6,17,29,71,98] and TM[27,29,30,46,51,52,53]. ORGANISM Homo sapiens Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 6378)
AUTHORS Oohashi,T., Sugimoto,M., Mattei,M.G. and Ninomiya,Y.
TITLE Identification of a new collagen IV chain, alpha 6(IV), by cDNA isolation and assignment of the gene to chromosome Xq22, which is the same locus for COL4A5 JOURNAL J. Biol. Chem. 269 (10), 7520-7526 (1994)
MEDLINE 94171779 REFERENCE 2 (bases 1 to 6378)
AUTHORS Oohashi,T. TITLE Direct Submission
JOURNAL Submitted (25-OCT-1993) to the DDBJ/EMBL/GenBank databases. Toshitaka Oohashi, Okayama University Medical School, Molecular Biology & Biochemistry; 2-5-1 Shikata-cho, Okayama, Okayama 700, Japan (Tel:086-223-7151(ex.2392), Fax:086-222-7768)
COMMENT Submitted (25-Oct-1993) to DDBJ by: Toshitaka Oohashi Department of Molecular Biology & Biochemistry Okayama University Medical School 2-5-1 Shikata-cho, Okayama Okayama 700 Japan Phone: 086-223-7151 x2392 Fax: 086-222-7768.
FEATURES Location/Qualifiers source 1..6378 /organism="Homo sapiens" /db_xref="taxon:9606" /clone_lib="whole eye and kidney" /sex="male & female" CDS 235..5271 /codon_start=1 /product="collagen" /db_xref="PID:d1005342" /db_xref="PID:g466538"
TRANSLATION=
"MHPGLWLLLVTLCLTEELAAAGEKSYGKPCGGQDCSGSCQCFPE KGARGRPGPIGIQGPTGPQGFTGSTGLSGLKGERGFPGLLGPYGPKGDKGPMGVPGFL GINGIPGHPGQPGPRGPPGLDGCNGTQGAVGFPGPDGYPGLLGPPGLPGQKGSKGDPV LAPGSFKGMKGDPGLPGLDGITGPQGAPGFPGAVGPAGPPGLQGPPGPPGPLGPDGNM GLGFQGEKGVKGDVGLPGPAGPPPSTGELEFMGFPKGKKGSKGEPGPKGFPGISGPPG FPGLGTTGEKGEKGEKGIPGLPGPRGPMGSEGVQGPPGQQGKKGTLGFPGLNGFQGIE GQKGDIGLPGPDVFIDIDGAVISGNPGDPGVPGLPGLKGDEGIQGLRGPSGVPGLPAL SGVPGALGPQGFPGLKGDQGNPGRTTIGAAGLPGRDGLPGPPGPPGPPSPEFETETLH NKESGFPGLRGEQGPKGNLGLKGIKGDSGFCACDGGVPNTGPPGEPGPPGPWGLIGLP GLKGARGDRGSGGAQGPAGAPGLVGPLGPSGPKGKKGEPILSTIQGMPGDRGDSGSQG FRGVIGEPGKDGVPGLPGLPGLPGDGGQGFPGEKGLPGLPGEKGHPGPPGLPGNGLPG LPGPRGLPGDKGKDGLPGQQGLPGSKGITLPCIIPGSYGPSGFPGTPGFPGPKGSRGL PGTPGQPGSSGSKGEPGSPGLVHLPELPGFPGPRGEKGLPGFPGLPGKDGLPGMIGSP GLPGSKGATGDIFGAENGAPGEQGLQGLTGHKGFLGDSGLPGLKGVHGKPGLLGPKGE RGSPGTPGQVGQPGTPGSSGPYGIKGKSGLPGAPGFPGISGHPGKKGTRGKKGPPGSI VKKGLPGLKGLPGNPGLVGLKGSPGSPGVAGLPALSGPKGEKGSVGFVGFPGIPGLPG ISGTRGLKGIPGSTGKMGPSGRAGTPGEKGDRGNPGPVGIPSPRRPMSNLWLKGDKGS QGSAGSNGFPGPRGDKGEAGRPGPPGLPGAPGLPGIIKGVSGKPGPPGFMGIRGLPGL KGSSGITGFPGMPGESGSQGIRGSPGLPGASGLPGLKGDNGQTVEISGSPGPKGQPGE SGFKGTKGRDGLIGNIGFPGNKGEDGKVGVSGDVGLPGAPGFPGVAGMRGEPGLPGSS GHQGAIGPLGSPGLIGPKGFPGFPGLHGLNGLPGTKGTHGTPGPSITGVPGPAGLPGP KGEKGYPGIGIGAPGKPGLRGQKGDRGFPGLQGPAGLPGAPGISLPSLIAGQPGDPGR PGLDGERGRPGPAGPPGPPGPSSNQGDTGDPGFPGIPGFSGLPGELGLKGMRGEPGFM GTPGKVGPPGDPGFPGMKGKAGARGSSGLQGDPGQTPTAEAVQVPPGPLGLPGIDGIP GLTGDPGAQGPVGLQGSKGLPGIPGKDGPSGLPGPPGALGDPGLPGLQGPPGFEGAPG QQGPFGMPGMPGQSMRVGYTLVKHSQSEQVPPCPIGMSQLWVGYSLLFVEGQEKAHNQ DLGFAGSCLPRFSTMPFIYCNINEVCHYARRNDKSYWLSTTAPIPMMPVSQTQIPQYI SRCSVCEAPSQAIAVHSQDITIPQCPLGWRSLWIGYSFLMHTAAGAEGGGQSLVSPGS CLEDFRATPFIECSGARGTCHYFANKYSFWLTTVEERQQFGELPVSETLKAGQLHTRV SRCQVCMKSL"
BASE COUNT 1486 a 1681 c 1867 g 1344 t
ORIGIN Chromosome Xq22. 1 atggtactat ctcctgagtg ctgcaagttg taacgggcac cgctgagcct gtttcccttt 61 ggagcacttc ttatctagaa gcagtgttta gtttcttcca aactgggcca cttcgtccac 121 ctactctgtt ctgagtaagg aaacagcctc caagcatcag cagagcccag atgagcacgg 181 gccgcggagc cgcttagcag tctcccggga cccagctccg gaggagccgc aagcatgcac 241 cctgggttgt ggctgctcct ggttacgttg tgcctgaccg aggaactggc agcagcggga 301 gagaagtctt atggaaagcc atgtgggggc caggactgca gtgggagctg tcagtgtttt 361 cctgagaaag gagcgagagg acgacctgga ccaattggaa ttcaaggccc aacaggtcct 421 caaggattca ctggctctac tggtttatcg ggattgaaag gagaaagggg tttcccaggc 481 cttctgggac cttatggacc aaaaggagat aagggtccca tgggagttcc tggctttctt 541 ggcatcaatg ggattccggg ccaccctgga caaccaggcc ccagaggccc acctggtctg 601 gatggctgta atggaactca aggagctgtt ggatttccag gccctgatgg ctatcctggg 661 cttctcggac cacccgggct tcctggtcag aaaggatcaa aaggtgaccc tgtccttgct 721 ccaggtagtt tcaaaggaat gaagggggat cctgggctgc ctggactgga tggaatcact 781 ggcccacaag gagcacccgg atttcctgga gctgtaggac ctgcaggacc accaggatta 841 caaggtcctc cagggcctcc tggtcctctt ggtcctgatg ggaatatggg gctaggtttt 901 caaggagaga aaggagtcaa gggggatgtt ggcctccctg gcccagcagg acctccacca 961 tctactggag agctggaatt catgggattc cccaaaggga agaaaggatc caagggtgaa 1021 ccagggccta agggttttcc aggcataagt ggccctccag gcttcccggg ccttggaact 1081 actggagaaa agggagaaaa gggagaaaag ggaatccctg gtttgccagg acctaggggt 1141 cccatgggtt cagaaggagt ccaaggccct ccagggcaac agggcaagaa agggaccctg 1201 ggatttcctg ggcttaatgg attccaagga attgagggtc aaaagggtga cattggcctg 1261 ccaggcccag atgttttcat cgatatagat ggtgctgtga tctcaggtaa tcctggagat 1321 cctggtgtac ctggcctccc aggccttaaa ggagatgaag gcatccaagg cctacgtggc 1381 ccttctggtg tccctggatt gccagcatta tcaggtgtcc caggagccct agggcctcag 1441 ggatttccag ggctgaaggg ggaccaagga aacccaggcc gtaccacaat tggagcagct 1501 ggcctccctg gcagagatgg tttgccaggc ccaccaggtc caccaggccc acctagtcca 1561 gaatttgaga ctgaaactct acacaacaaa gagtcagggt tccctggtct ccgaggagaa 1621 caaggtccaa aaggaaacct aggcctcaaa ggaataaaag gagactcagg tttctgtgct 1681 tgtgacggtg gtgttcccaa cactggacca cccggggaac caggcccacc tggtccatgg 1741 ggtctcatag gccttccagg ccttaaagga gccagaggag atcgaggctc tgggggtgca 1801 cagggcccag caggggctcc aggcttagtt gggcctctgg gtccttcagg acccaaagga 1861 aagaaggggg aaccaattct cagtacaatc caaggaatgc caggagatcg gggtgattct 1921 ggctcccagg gcttccgtgg tgtaatagga gaaccaggca aggacggagt accaggttta 1981 ccaggtctgc caggccttcc gggtgatggt ggacagggct tcccaggtga aaaggggtta 2041 cctggacttc ctggtgaaaa aggccatcct ggtccacctg gcctcccagg aaatgggtta 2101 ccaggacttc ctggaccccg tgggcttcct ggagataaag gcaaggatgg attaccggga 2161 caacaaggcc ttcccggatc taagggaatc accctgccct gtattattcc tgggtcatac 2221 ggtccatcag gatttccagg cactcccgga ttcccaggcc ctaaagggtc tcgaggcctc 2281 cctgggaccc caggccagcc tgggtcaagt ggaagtaaag gagagccagg gagtccagga 2341 ttggttcatc ttcctgaatt accaggattt cctggacctc gtggggagaa gggcttgcct 2401 gggtttcctg ggctccctgg aaaagatggc ttgcctggga tgattggcag tccaggctta 2461 cctggttcca agggagccac tggtgacatc tttggtgctg aaaatggtgc tccgggggaa 2521 caaggcctac aaggattaac agggcacaaa ggatttcttg gagactctgg ccttccagga 2581 ctcaagggtg tgcacgggaa gcctggctta ctaggcccca aaggtgagcg gggcagccct 2641 gggacaccag gacaggtggg acagccaggc accccaggat ctagtggtcc atatggcatc 2701 aagggcaaat ctgggctccc aggagcacca ggcttcccag gcatctcagg acatcctgga 2761 aagaaaggaa caagaggcaa gaaaggtcct cctggatcaa ttgtaaagaa agggctgcca 2821 gggctaaaag gccttcctgg aaatccaggc ctagtaggac tgaaaggaag cccaggctct 2881 ccaggggtcg ctgggttgcc agccctctct ggacccaagg gagagaaggg gtctgttgga 2941 ttcgtaggtt ttccaggaat accaggtctg cctggtattt ctggaacaag aggattaaaa 3001 ggaattccag gatcaactgg aaaaatggga ccatctggac gcgctggtac tcctggtgaa 3061 aagggagaca gaggcaatcc ggggccagtc ggaataccta gtccaagacg tccaatgtca 3121 aacctttggc tcaaaggaga caaaggctct caaggctcag ccggatccaa tggatttcct 3181 gggccaagag gtgacaaagg agaggctggt cgacctggac caccaggcct acctggagct 3241 cctggcctcc caggcattat caaaggagtt agtggaaagc cagggccccc tggcttcatg 3301 ggaatccggg gtttacctgg cctgaagggg tcctctggga tcacaggttt cccaggaatg 3361 ccaggagaaa gtggttcaca aggtatcaga gggtcgcctg gactcccagg agcatctggt 3421 ctcccaggcc tgaaaggaga caacggccag acagttgaaa tttccggtag cccaggaccc 3481 aagggacagc ctggcgaatc tggttttaaa ggcacaaaag gaagagatgg actaataggc 3541 aatataggct tccctggaaa caaaggtgaa gatggaaaag ttggtgtttc tggagatgtt 3601 ggccttcctg gagctccagg atttccagga gttgccggca tgagaggaga accaggactt 3661 ccaggttctt ctggtcacca aggggcaatt gggcctctag gatcccccgg attaatagga 3721 cccaaaggct tccctggatt tcctggttta catggactga atgggcttcc gggcaccaag 3781 ggtacccatg gcactccagg acctagtatc accggtgtgc ctgggcctgc tggtctccct 3841 ggacccaaag gagaaaaagg atatccagga attggcatcg gagctccagg gaagccgggc 3901 ctgagagggc aaaaaggtga tcgaggtttc ccaggtctcc agggccctgc tggtctcccc 3961 ggtgccccag gcatctcctt gccctcactc atagcaggac agcctggtga ccccgggcga 4021 ccaggcctag atggagaacg aggccgccca ggccccgctg gacccccagg tccccctggg 4081 ccatcctcga atcaaggcga caccggagac cctggcttcc ctggaattcc aggtttttct 4141 ggcctccctg gagagctagg actgaaaggc atgagaggtg agcctggctt catggggact 4201 ccaggcaagg ttgggccacc tggagaccca ggatttcccg gaatgaaggg gaaggcaggg 4261 gcaagaggct cttctggcct ccaaggtgat cctggacaaa caccaactgc agaagctgtc 4321 caggttcctc ctggaccctt gggtctacca gggatcgatg gcatccctgg cctcactggg 4381 gaccctgggg ctcaaggccc tgtaggccta caaggctcca aaggtttacc tggcatcccc 4441 ggtaaagatg gccccagtgg gctcccaggc ccacctgggg ctcttggtga tcctggtctg 4501 cctggactgc aaggccctcc aggatttgaa ggagctccag ggcagcaagg ccccttcggg 4561 atgcctggaa tgcctggcca gagcatgaga gtgggctaca cgttggtaaa gcacagccag 4621 tcggaacagg tgcccccgtg tcccatcggg atgagccagc tgtgggtggg gtacagctta 4681 ctgtttgtgg aggggcaaga gaaagcccac aaccaggacc tgggctttgc tggctcctgt 4741 ctgccccgct tcagcaccat gcccttcatc tactgcaaca tcaacgaggt gtgccactat 4801 gccaggcgca atgataaatc ttactggctc tccactaccg cccctatccc catgatgccc 4861 gtcagccaga cccagattcc ccagtacatc agccgctgct ctgtgtgtga ggcaccctcg 4921 caagccattg ctgtgcacag ccaggacatc accatcccgc agtgccccct gggctggcgc 4981 agcctctgga ttgggtactc tttcctcatg cacactgccg ctggtgccga gggtggaggc 5041 cagtccctgg tctcacctgg ctcctgccta gaggactttc gggccactcc tttcatcgaa 5101 tgcagtggtg cccgaggcac ctgccactac tttgcaaaca agtacagttt ctggttgacc 5161 acagtggagg agaggcagca gtttggggag ttgcctgtgt ctgaaacgct gaaagctggg 5221 cagctccaca ctcgagtcag tcgctgccag gtgtgtatga aaagcctgta gggtggcacc 5281 tgccactctg ccccttgccc tcccctgccc ctcacaacag tcacctcaca aacctgaatg 5341 gtctgaagaa ggaaggcctg agcccctttg cctgtcaagt tgtacattgg agtctcattt 5401 gggctagact accggacact cgtcacccca gccctcgggt ccatagagat gagcccaccc 5461 tgctgagatc tgctgtcctg tttctgtcaa gctggtgcta ctgtttgatt tggatgattg 5521 tgtgactatt catggctacc tcagaaagat ttgatgggcc acaactgtct tagactgcta 5581 gctttctcct taccgtcttg atcggaaagc tcttccgaat cgctaatcag tcatttcttc 5641 atgtacagag gtcagcacac attatttggc ttaaaccaga acccagtgtt tccacactta 5701 aattctctaa ccgaatattc atggatggct caagtctgca cagagcaagt cctcactctt 5761 caaggaggcc cactgtgtct aggcaggcaa gagaattgaa atgaggtgcc acccagtagc 5821 ccagagtgag ctttagctct agaatgagca agactgggcc ccacatggct tagagaggct 5881 tgaaggccag cagctgggtt gggggtggtg gtcattaatg gcatatggtc ctagacaaac 5941 catctcctcc ttgccggctc cccctccagc cagagacaga ggatgtggcc tggttcaaag 6001 taaagcagag gatgcaacaa atgtggccaa gctatcaaag gaaatgagaa tgacagcctt 6061 ttttcctggg ccagaagtag agggggtggg tgcgtaggat gtgtgagttt tgcttttgac 6121 tccaggaaca aaaaggtaaa tcccacatcc cagtttctca gaagtccctg tttattccaa 6181 ttgccatcag atgtgtgcaa tgtggcaaac tgaagctgca cagtgttggt ttccttgtat 6241 tctgaggatg ttaaagactt tgttaaatgg ttatccaatt gctctttcac aggtagccta 6301 ttaaactatt ttaatatgtt tttttaaacc tcataaaaat ctagcacact cttctcttga 6361 gcagttagca gaccaccg