[ Fold Library: v.1.53.6353 ]

[ Sequence Database: v.2001.10.27 ]

[ 3D-PSSM Binary: v.2.2 ]

[ Server Version: v.2.6.0 ]

Results for SST2_____

Disclaimer and Terms of Use

Please Cite: Enhanced Genome Annotation using Structural Profiles in the Program 3D-PSSM.
Kelley LA, MacCallum RM & Sternberg MJE (2000). J. Mol. Biol. 299(2), 499-520.

Sidechains, where applicable, have been modelled by SCWRL

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Job Submitted on Fri Nov 9 04:23:49 GMT 2001

Description:

SST2_____

Remote Host:

firewall.davidson.edu

Remote Address:

152.42.15.254

E-mail Address:

amhartman@davidson.edu

Input Format:

single

Query Length:

698

Global Local:

yes

Low-complexity Filter:

yes

PROSITE motifs

NONE

 

Query Functional Keywords

Weight

Signal transduction inhibitor

62

Pheromone response

13

Alternative splicing

8

Repeat

7

Transmembrane

6

E-value Key (% Certainty)

  95%  

  90%  

  80%  

  70%  

  50%  


View Alignment

SCOP

Template Lengths

Model

PSSM E_value

PSSM Type

SAWTED E-value

Biotext

Class

Fold

SuperFamily

Family

Protein

Species

ID

Region

CS

View Alignment

d1agre_ 17%i.d.

128

View Model or Shift-Click to Save Coordinates
With Sidechains

4.91e-06

R1D

0.00182
rgs,driving,gdp-bound,increasing,gtpase

0.98 Alternative splicing,
Repeat,
Signal transduction inhibitor,

All alpha proteins

Regulator of G-protein signalling, RGS

Regulator of G-protein signalling, RGS

Regulator of G-protein signalling, RGS

Regulator of G-protein signalling 4, RGS4

Rat (Rattus norvegicus)

1agr

e:

0.000

View Alignment

d1cmza_ 21%i.d.

128

View Model or Shift-Click to Save Coordinates
With Sidechains

0.0027

R1D

0.186
rgs,TRANSDUCTION,INHIBITOR,liver,g

0.70 Repeat,
Signal transduction inhibitor,
Alternative splicing,
Pheromone response,

All alpha proteins

Regulator of G-protein signalling, RGS

Regulator of G-protein signalling, RGS

Regulator of G-protein signalling, RGS

Galpha interacting protein, GaIP

Human (Homo sapiens)

1cmz

a:

0.000

View Alignment

c1fqjb_ 17%i.d.

133

View Model or Shift-Click to Save Coordinates
With Sidechains

0.0027

R1D

0.00551
phototransduction,rgs,driving,gdp-bound,increasing  *

n/a

All alpha proteins

Regulator of G-protein signalling, RGS

Regulator of G-protein signalling, RGS

homol. to d1cmza_

-

-

1fqj

b

0.000

View Alignment

c1emua_ 19%i.d.

132

View Model or Shift-Click to Save Coordinates
With Sidechains

0.0027

R1D

1 *

0.74 Repeat,
Signal transduction inhibitor,
Alternative splicing,

All alpha proteins

Regulator of G-protein signalling, RGS

Regulator of G-protein signalling, RGS

homol. to d1cmza_

-

-

1emu

a

0.000

View Alignment

c1gln__ 13%i.d.

468

View Model or Shift-Click to Save Coordinates

0.226

1D

1

0.00

not in SCOP 1.53

3D-PSSM pseudo-family

founder id c1gln__

-

-

-

1gln

-

0.000

View Alignment

c1bg5__ 12%i.d.

254

View Model or Shift-Click to Save Coordinates

1.05

1D

0.628
increasing,alpha,role

0.01 Repeat,

not in SCOP 1.53

3D-PSSM pseudo-family

founder id c1bg5__

-

-

-

1bg5

-

0.000

View Alignment

d1tfr_1 22%i.d.

123

View Model or Shift-Click to Save Coordinates

1.06

1D

1

0.00

All alpha proteins

SAM domain-like

5' to 3' exonuclease, C-terminal subdomain

5' to 3' exonuclease, C-terminal subdomain

T4 RNase H

Bacteriophage T4

1tfr

183-305

1.000

View Alignment

c1d9ta_ 16%i.d.

281

View Model or Shift-Click to Save Coordinates

1.52

1D

1

0.00

Alpha and beta proteins (a/b)

Glucosamine 6-phosphate deaminase

Glucosamine 6-phosphate deaminase

homol. to d1deaa_

-

-

1d9t

a

0.000

View Alignment

d1d2ra_ 17%i.d.

326

View Model or Shift-Click to Save Coordinates

2.46

R1D

1

n/a

Alpha and beta proteins (a/b)

Adenine nucleotide alpha hydrolase-like

Nucleotidylyl transferase

Class I aminoacyl-tRNA synthetases (RS), catalytic domain

Tryptophanyl-tRNA synthetase (TrpRS)

Bacillus stearothermophilus

1d2r

a:

0.658

View Alignment

d1bz4a_ 12%i.d.

144

View Model or Shift-Click to Save Coordinates

2.75

R1D

0.921
liver,expressed,SIGNAL

0.02 Repeat,

All alpha proteins

Four-helical up-and-down bundle

Apolipoprotein

Apolipoprotein

Apolipoprotein E3

Human (Homo sapiens)

1bz4

a:

0.500

View Alignment

c2ezb__ 16%i.d.

249

View Model or Shift-Click to Save Coordinates

3.02

R1D

1

n/a

not in SCOP 1.53

3D-PSSM pseudo-family

founder id c2ezb__

-

-

-

2ezb

-

0.000

View Alignment

c1fsha_ 17%i.d.

94

View Model or Shift-Click to Save Coordinates

3.03

1D

0.486
transduction,signal,role

0.72 Signal transduction inhibitor,

not in SCOP 1.53

3D-PSSM pseudo-family

founder id c1fsha_

-

-

-

1fsh

a

0.000

View Alignment

c1cpo__ 18%i.d.

298

View Model or Shift-Click to Save Coordinates

3.21

1D

0.981
SIGNAL

0.00

not in SCOP 1.53

3D-PSSM pseudo-family

founder id c1cpo__

-

-

-

1cpo

-

0.000

View Alignment

c1ekua_ 15%i.d.

252

View Model or Shift-Click to Save Coordinates

3.39

1D

0.761
activated,important,SIGNAL

0.00

not in SCOP 1.53

3D-PSSM pseudo-family

founder id c1ekua_

-

-

-

1eku

a

0.000

View Alignment

c1htjf_ 17%i.d.

178

View Model or Shift-Click to Save Coordinates

3.71

R1D

1

n/a

not in SCOP 1.53

3D-PSSM pseudo-family

founder id c1htjf_

-

-

-

1htj

f

0.000

View Alignment

c1j7ua_ 16%i.d.

263

View Model or Shift-Click to Save Coordinates

5.22

R1D

1

n/a

not in SCOP 1.53

3D-PSSM pseudo-family

founder id c1j7ua_

-

-

-

1j7u

a

0.000

View Alignment

d1qgha_ 9%i.d.

150

View Model or Shift-Click to Save Coordinates

6.26

1D

1

0.00

All alpha proteins

Ferritin-like

Ferritin-like

Ferritin

Dodecameric ferritin homolog DPS

Listeria innocua

1qgh

a:

0.888

View Alignment

d1qu2a3 10%i.d.

450

View Model or Shift-Click to Save Coordinates

6.33

1D

0.935
binds

0.00

Alpha and beta proteins (a/b)

Adenine nucleotide alpha hydrolase-like

Nucleotidylyl transferase

Class I aminoacyl-tRNA synthetases (RS), catalytic domain

Isoleucyl-tRNA synthetase (IleRS)

Staphylococcus aureus

1qu2

a:1-200,a:395-644

0.500

View Alignment

d1dcea1 10%i.d.

332

View Model or Shift-Click to Save Coordinates

6.67

1D

0.822
liver,alpha

n/a

All alpha proteins

alpha-alpha superhelix

Protein prenylyltransferase

Protein prenylyltransferase

Rab geranylgeranyltransferase alpha-subunit, N-terminal domain

Rat (Rattus norvegicus)

1dce

a:2-240,a:351-443

0.000

View Alignment

d1ayx__ 14%i.d.

492

View Model or Shift-Click to Save Coordinates

7.47

R1D

0.976
SIGNAL

0.02 Alternative splicing,
Transmembrane,

All alpha proteins

alpha/alpha toroid

Six-hairpin glycosyltransferases

Glucoamylase

Glucoamylase

Yeast (Saccharomycopsis fibuligera)

1ayx

-

0.886