View Alignment

SCOP

Template Lengths

Model

PSSM E_value

PSSM Type

SAWTED E-value

Biotext

Class

Fold

SuperFamily

Family

Protein

Species

ID

Region

CS

c1f7ca_ 12%i.d.

182

4.37

1D

1

n/a

All alpha proteins

GTPase activation domain, GAP

GTPase activation domain, GAP

homol. to d1pbwa_

-

-

1f7c

a

0.000

d1dbha1 20%i.d.

204

6.14

R1D

1

n/a

All alpha proteins

DBL homology domain

DBL homology domain

DBL homology domain

Son of sevenless-1 (sos-1)

Human (Homo sapiens)

1dbh

a:198-404

0.000

c1f1ea_ 25%i.d.

147

6.38

R1D

1

n/a

not in SCOP 1.53

3D-PSSM pseudo-family

founder id c1f1ea_

-

-

-

1f1e

a

0.000

c1euma_ 24%i.d.

161

6.42

R1D

1

n/a

All alpha proteins

Ferritin-like

Ferritin-like

homol. to d1rcd__

-

-

1eum

a

0.000

d2lhb__ 27%i.d.

149

6.66

R1D

1

n/a

All alpha proteins

Globin-like

Globin-like

Globins

Lamprey globin

Sea lamprey (Petromyzon marinus)

2lhb

-

0.832

d1ash__ 15%i.d.

147

9.22

1D

1

n/a

All alpha proteins

Globin-like

Globin-like

Globins

Ascaris hemoglobin, domain 1

Pig roundworm (Ascaris suum)

1ash

-

0.972

d1a26_1 24%i.d.

135

9.58

1D

1

n/a

All alpha proteins

Domain of poly(ADP-ribose) polymerase

Domain of poly(ADP-ribose) polymerase

Domain of poly(ADP-ribose) polymerase

Domain of poly(ADP-ribose) polymerase

Chicken (Gallus gallus)

1a26

662-796

0.500

d1guxb_ 21%i.d.

141

11.1

R1D

1

n/a

All alpha proteins

Cyclin-like

Cyclin-like

Retinoblastoma tumor suppressor domains

Retinoblastoma tumor suppressor domains

Human (Homo sapiens)

1gux

b:

0.901

d1bf5a1 19%i.d.

167

11.6

R1D

1

n/a

All alpha proteins

STAT-like

STAT

STAT

STAT-1, coiled coil domain

Human (Homo sapiens)

1bf5

a:136-316

0.000

c1f4oa_ 13%i.d.

165

11.8

1D

1

n/a

All alpha proteins

EF Hand-like

EF-hand

homol. to d1auib_

-

-

1f4o

a

0.000

d1c02a_ 23%i.d.

166

12.3

R1D

1

n/a

All alpha proteins

Four-helical up-and-down bundle

Histidine-containing phosphotransfer domain, HPT domain

Phosphorelay protein ypd1

Phosphorelay protein ypd1

Yeast (Saccharomyces cerevisiae)

1c02

a:

0.000

d1alu__ 20%i.d.

157

12.5

R1D

1

n/a

All alpha proteins

4-helical cytokines

4-helical cytokines

Long-chain cytokines

Interleukin-6

Human (Homo sapiens)

1alu

-

0.500

d1df0a1 14%i.d.

181

12.6

1D

1

n/a

All alpha proteins

EF Hand-like

EF-hand

EF-hand modules in multidomain proteins

Calpain large subunit, C-terminal domain (domain IV)

Rat (Rattus norvegicus)

1df0

a:515-700

0.500

d1alva_ 22%i.d.

173

12.9

R1D

1

n/a

All alpha proteins

EF Hand-like

EF-hand

EF-hand modules in multidomain proteins

Calpain small (regulatory) subunit (domain VI)

Pig (Sus scrofa)

1alv

a:

0.500

d1rpl__ 16%i.d.

241

13.4

R1D

1

n/a

Multi-domain proteins (alpha and beta)

Nucleotidyltransferases

Nucleotidyltransferases

DNA polymerase beta, catalytic (31 kD) fragment

DNA polymerase beta, catalytic (31 kD) fragment

Rat (Rattus norvegicus)

1rpl

-

0.000

d2fcr__ 11%i.d.

173

13.6

1D

1

n/a

Alpha and beta proteins (a/b)

Flavodoxin-like

Flavoproteins

Flavodoxin-related

Flavodoxin

Chondrus crispus

2fcr

-

0.964

d1bm0a2 20%i.d.

192

13.8

R1D

1

n/a

All alpha proteins

Serum albumin

Serum albumin

Serum albumin

Serum albumin

Human (Homo sapiens)

1bm0

a:197-388

0.850

c1repc_ 16%i.d.

214

14

R1D

1

n/a

not in SCOP 1.53

3D-PSSM pseudo-family

founder id c1repc_

-

-

-

1rep

c

0.000

c1e96b_ 15%i.d.

185

14.1

R1D

1

n/a

not in SCOP 1.53

3D-PSSM pseudo-family

founder id c1e96b_

-

-

-

1e96

b

0.000

c1ekua_ 13%i.d.

252

14.3

1D

1

n/a

not in SCOP 1.53

3D-PSSM pseudo-family

founder id c1ekua_

-

-

-

1eku

a

0.000