[ Fold Library: v.1.53.6353 ] [ Sequence Database: v.2001.10.27 ] [ 3D-PSSM Binary: v.2.2 ] [ Server Version: v.2.6.0 ]
Results for YmL28____

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Please Cite: Enhanced Genome Annotation using Structural Profiles in the Program 3D-PSSM.
Kelley LA, MacCallum RM & Sternberg MJE (2000). J. Mol. Biol. 299(2), 499-520.

Sidechains, where applicable, have been modelled by SCWRL

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Job Submitted on Fri Nov 9 10:37:17 GMT 2001


Description: YmL28____
Remote Host: adsl-80-141-158.clt.bellsouth.net
Remote Address: 65.80.141.158
E-mail Address: pelowry@davidson.edu
Input Format: single
Query Length: 147
Global Local: yes
Low-complexity Filter: yes
PROSITE motifs
NONE                                                  

Query Functional Keywords Weight
Ribosomal protein 7
Mitochondrion 7

E-value Key (% Certainty)
  95%     90%     80%     70%     50%  

View Alignment SCOP Template Lengths Model PSSM E_value PSSM Type SAWTED E-value Biotext Class Fold SuperFamily Family Protein Species ID Region CS
View Alignment c1ibmt_ 19%i.d. 99 View Model or Shift-Click to Save Coordinates 3.39 R1D 0.55
RIBOSOMAL
n/a not in SCOP 1.53 3D-PSSM pseudo-family founder id c1ibmt_ - - - 1ibm t 0.000
View Alignment c1hs7a_ 24%i.d. 97 View Model or Shift-Click to Save Coordinates 3.47 R1D 1 n/a not in SCOP 1.53 3D-PSSM pseudo-family founder id c1hs7a_ - - - 1hs7 a 0.000
View Alignment d1eqzb_ 22%i.d. 108 View Model or Shift-Click to Save Coordinates 4.35 1D 1 n/a All alpha proteins Histone-fold Histone-fold Nucleosome core histones Histone H2B Chicken (Gallus gallus), erythrocytes 1eqz b: 1.000
View Alignment d1jhga_ 23%i.d. 101 View Model or Shift-Click to Save Coordinates 7.69 1D 1 0.00 All alpha proteins Trp repressor Trp repressor Trp repressor Trp repressor Escherichia coli 1jhg a: 0.500
View Alignment d2lefa_ 17%i.d. 86 View Model or Shift-Click to Save Coordinates 7.83 R1D 1 0.00 All alpha proteins HMG-box HMG-box HMG-box Lymphoid enhancer-binding factor, LEF1 Mouse (Mus musculus) 2lef a: 0.975
View Alignment d1tfr_1 15%i.d. 123 View Model or Shift-Click to Save Coordinates 7.96 1D 1 0.00 All alpha proteins SAM domain-like 5' to 3' exonuclease, C-terminal subdomain 5' to 3' exonuclease, C-terminal subdomain T4 RNase H Bacteriophage T4 1tfr 183-305 1.000
View Alignment d1ez3a_ 18%i.d. 124 View Model or Shift-Click to Save Coordinates 7.99 1D 1 n/a All alpha proteins STAT-like Syntaxin 1A N-terminal domain Syntaxin 1A N-terminal domain Syntaxin 1A N-terminal domain Rat (Rattus norvegicus) 1ez3 a: 0.500
View Alignment d2fhea1 12%i.d. 136 View Model or Shift-Click to Save Coordinates 8.22 1D 1 0.00 All alpha proteins Glutathione S-transferases, C-terminal domain Glutathione S-transferases, C-terminal domain Glutathione S-transferases, C-terminal domain Glutathione S-transferase Fasciola hepatica 2fhe a:81-216 0.875
View Alignment d1d9ca_ 16%i.d. 121 View Model or Shift-Click to Save Coordinates 9.12 1D 1 0.00 All alpha proteins 4-helical cytokines 4-helical cytokines Interferons/interleukin-10 (IL-10) Interferon-gamma Bovine (Bos taurus) 1d9c a: 0.500
View Alignment c1enva_ 21%i.d. 115 View Model or Shift-Click to Save Coordinates 9.15 1D 1 0.00 not in SCOP 1.53 3D-PSSM pseudo-family founder id c1enva_ - - - 1env a 0.000
View Alignment d1a8h_1 20%i.d. 152 View Model or Shift-Click to Save Coordinates 9.93 R1D 1 0.06 Mitochondrion,
All alpha proteins Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Methionyl-tRNA synthetase (MetRS) Thermus thermophilus 1a8h 349-500 0.846
View Alignment d1octc1 20%i.d. 60 View Model or Shift-Click to Save Coordinates 10 R1D 1 0.00 All alpha proteins DNA/RNA-binding 3-helical bundle Homeodomain-like Homeodomain Oct-1 POU Homeodomain Human (Homo sapiens) 1oct c:102-161 0.500
View Alignment d1bmta1 12%i.d. 90 View Model or Shift-Click to Save Coordinates 10 1D 1 0.00 All alpha proteins Methionine synthase domain-like Methionine synthase domain Methionine synthase domain Methionine synthase domain Escherichia coli 1bmt a:651-740 0.500
View Alignment d1seta1 23%i.d. 110 View Model or Shift-Click to Save Coordinates 10.3 1D 1 0.00 All alpha proteins Long alpha-hairpin A class II aminoacyl-tRNA synthetase N-domain Seryl-tRNA synthetase (SerRS) Seryl-tRNA synthetase (SerRS) Thermus thermophilus, strain hb27 1set a:1-110 0.000
View Alignment d1qrjb1 11%i.d. 84 View Model or Shift-Click to Save Coordinates 10.4 1D 1 0.00 All alpha proteins Acyl carrier protein-like Retrovirus capsid protein C-terminal domain Retrovirus capsid protein C-terminal domain HTLV-I capsid protein Human t-cell leukemia virus, type I, HTLV-I 1qrj b:131-214 1.000
View Alignment c2hapc_ 21%i.d. 76 View Model or Shift-Click to Save Coordinates 10.6 1D 1 0.00 not in SCOP 1.53 3D-PSSM pseudo-family founder id c2hapc_ - - - 2hap c 0.000
View Alignment d1cxzb_ 23%i.d. 86 View Model or Shift-Click to Save Coordinates 10.8 1D 1 n/a All alpha proteins Long alpha-hairpin Effector domain of the protein kinase pkn/prk1 Effector domain of the protein kinase pkn/prk1 Effector domain of the protein kinase pkn/prk1 Human (Homo sapiens) 1cxz b: 0.500
View Alignment d1higa_ 17%i.d. 123 View Model or Shift-Click to Save Coordinates 10.9 R1D 1 0.00 All alpha proteins 4-helical cytokines 4-helical cytokines Interferons/interleukin-10 (IL-10) Interferon-gamma Human (Homo sapiens) 1hig a: 0.500
View Alignment d1hsm__ 23%i.d. 79 View Model or Shift-Click to Save Coordinates 11.5 1D 1 0.00 All alpha proteins HMG-box HMG-box HMG-box HMG1, domains A and B Rat/Hamster (Rattus norvegicus/Cricetulus griseus) 1hsm - 1.000
View Alignment c1szt__ 24%i.d. 68 View Model or Shift-Click to Save Coordinates 11.9 1D 1 n/a not in SCOP 1.53 3D-PSSM pseudo-family founder id c1szt__ - - - 1szt - 0.000