LOCUS AF000634 7646 bp mRNA INV 30-OCT-1997
DEFINITION Lytechinus variegatus notch homolog (LvNotch) mRNA, complete cds.
ACCESSION AF000634
NID g2570350
KEYWORDS .
SOURCE green urchin.
ORGANISM Lytechinus variegatus
Eukaryotae; Metazoa; Echinodermata; Echinozoa; Echinoidea;
Euechinoidea; Echinacea; Temnopleuroida; Toxopneustidae;
Lytechinus.
REFERENCE 1 (bases 1 to 7646)
AUTHORS Sherwood,D.R. and McClay,D.R.
TITLE Identification and localization of a sea urchin Notch homologue:
insights into vegetal plate regionalization and Notch receptor
regulation
JOURNAL Development 124 (17), 3363-3374 (1997)
MEDLINE 97454256
REFERENCE 2 (bases 1 to 7646)
AUTHORS Sherwood,D.R. and McClay,D.R.
TITLE Direct Submission
JOURNAL Submitted (21-APR-1997) Zoology/DCMB Group, Duke University,
Research Drive, Box 91000, Durham, NC 27708, USA
FEATURES Location/Qualifiers
source 1..7646
/organism="Lytechinus variegatus"
/db_xref="taxon:7654"
CDS 5..7600
/note="LvNotch"
/codon_start=1
/product="notch homolog"
/db_xref="PID:g2570351"
/translation="MRRTTHSGISIFCLPKVGLFLVVVISTLTSYGASGTSTCSPNPC
NGGTCIPPDTQDGEVTCSCERTHVGDRCQFENPCYHAEICQNDGECEVRFNSDGSNPY
FHCNCPLGYELSLCEGEVDNVCKLEEPCQNGGTCRLTTSLWDYECFCTPANTGENCTD
DNHCVSNPCLNGAVCTSSSDGYSCECAQGFQGDTCNNDINECTRPNGPTVCYNGGTCF
NQYGGFQCECPLGFTGDQCELVYEPCSPDPCRNGGQCASTGPYTFTCTCQNGFTGETC
ELNLNDCTQHQCLNGGTCIDGVNDYTCSCLKEFTGTYCEMDFDECDTAVDPCFNGGTC
SNTYGNFSCICVRGWEGQTCEINKDDCTPNPCQFEGECEDRVASFKCTCPPGRTGLLC
HLEDACMSNPCHHTAQCSTSVVDGSFICDCATGYQGFNCSEDIDECSLSMDSICQSGG
TCQNFDGGWSCLCSSGFTGSRCETDIDECDDDPCYNGGTCLNKRGGYACICLTGFTGT
LCETDINECSSNPCLNGASCFDITGRFECACLAGYTGTTCQVNIDDCQSSPCENGGTC
IDGVNQFTCLCETGYEGHRCEMDSDECASRPCMNGGVCEDLIGFYQCNCPVGTSGDNC
EYNHYDCSSNPCVNDGTCVDGINEYTCMCHEGYRGLNCEEDIDDCESRPCHNGGTCVD
EVNGYHCLCPIGYHDPFCMSNINECSSNPCVNGGSCHDGVNEYSCECMAGYTGTRCTD
DFDECSSNPCQHGGTCDNRHAFYNCTCQAGYTGLNCEVNIDDCVDEPCLNGGICIDEV
NSFQCVCPQTFVGLLCETERSPCEDNQCQNGATCVYSEDYAGYSCRCTSGFQGNFCDD
DRNECLFSPCRNGGSCTNLEGSFECSCLPGYDGPICEINIDECASGPCTNGGICTDLI
DDYFCSCQRGFTGKNCQNDTDECLSSPCRNGATCHEYVDSYTCSCLVGFSGMHCEIND
QDCTTSSCLYGGTCIDGVNSYTCECVTGYTGSNCQIEINECDSDPCENGATCQDRFGS
YSCHCDVGFTGLNCEHVVQWCSPQNNPCYNGATCVAMGHLYECHCASNWIGKLCDVPK
VSCDIAASDKNVTRSELCLNGGTCIDATSSHSCLCQDGYTGSYCEVNIDECASAPCHN
GGTCTDGVYSYTCSCLPGFEGPRCQQNINECASSPCHNGGQCHDMVNGYTCSCPAGTQ
GTDCSINLDDCYEGACYHGGVCIDQVGTYTCDCPLGFVGQHCEGDVNECLSNPCDPVG
SQDCVQLINNYQCVCKPGYTGQDCEQEIPNCQNDPCQNNGLCLPSDEGYYCDCLRGFT
GVHCETKLTPCGTHPCQNEGTCMEYGDDFDDYTCMCPSGVSGDNCEIDYNECASSPCI
NGGTCLDEYGQYRCDCPATWNGRNCHLFDPTFAGGIGMDPEIPTEPPVTIPITVATTT
EPPRCSQECLRKKGDYFCDEECNTHLCEWDGKDCSLNLDPWENCTAANVPCWNRFGDG
SCDRECNNHGCLFDGFDCVDQKPEECGEDAFCLERYGNGFCDEECNNIGCLYDGLDCE
ENPEFAHGVLIVDVMIPYAEMLTLNRSQMFLQDMSVVLNTVVLFAPTADNQNKIEPWE
NDPRAVRAPVRRDVLAVSREGKLTVKKRQAELTPDDGTKCFLLLDNYKCHQDRPGNCF
ETAADAAAYLAALVTSQLLPTSLPITGVGSETTPAQTVSPSVLIAVAIIGAFVIAAAC
VIARKRFRTNGTWFPSNFVRTSSTKSENPKVPRECPIGNESPPSTICSSIDAGEDAMN
ALECRAPKRQRISRLSPVDYGQGHTTLDTDTPWMTMTSNGPLHPSMALTPPRDQEPPF
ITNKGPDGLTPLMLAVMRSKASITDQEEETHAHFIEDLITRGGDINHRTETRGETALH
LAARYNLPVAARKLLEYSVNTNAEDNMGETPLHAAVRADAIEVFRLLIQNRSTQIDAK
TKAGYTPMIIAVRLMVENMVEELELAGADTAATDNDGRSALMWAAALNHLPALEFLLK
KGSNKDLQDNQEQTPLFLAAKEGHVGAVKMLLDHGANREITDHLDMSPREIANRMSLQ
DVVRLLDTYSMMSPALTPNSHVTSPMDMHNGELGYSNGAKPKKKRGTNKNGDVRERGK
EKRKGKKRPSSDESLPPLVPSPPESVESPQGYNRTPPPGGIYSLPVTTQNVMMPQDHY
QLKEVARHGQGPHVVDMHPNTIMNGRLYVPGNNPSPAKGSMGGENMDIPGASDLVSQT
IWSPDHALLQNQRSMHDPNVMVPGTTSQAMAMIRQAPSTQSMQQTLSPEARDSSPKPC
TMVPSPTISNQYIMASSPNLPSTTSQATHYARANNPLYAGSPHRGKVPQQIHSMYQSQ
NRMNPRACISELPNGHPNSPENCMQEYMIREPELLNPAKQSMYVVNGKVPNGQHRDIL
SEKTSFSNPHNNNGSTVDPSCTYTMVAHMPDHSFPTPSPESPSKWSNPSPTSASDWSG
SEAISSPPVPPNQQQVSGQELMNGHTGRLLTGHDMPLGISLQGSCTEVAYI"
BASE COUNT 1926 a 2001 c 2016 g 1703 t
ORIGIN
1 gaagatgagg cggactaccc actcaggaat ttcaattttt tgtcttccca aagttggatt
61 atttctggtg gtggtgatct caactttgac gagttacggt gcaagtggta ccagtacgtg
121 tagtcccaat ccatgcaatg gcggaacttg tatacctcca gacacgcaag acggcgaggt
181 gacatgcagt tgtgaaagga cccacgtagg ggaccggtgc cagttcgaga acccttgcta
241 ccatgcagaa atctgccaaa acgatggtga atgcgaagtc cggttcaaca gcgacgggag
301 caatccgtat tttcactgca attgtcctct gggatacgaa ctgagtcttt gcgaaggcga
361 agtggacaat gtgtgtaagc ttgaggaacc ttgccagaac ggcggtactt gccgcctcac
421 cacgtcgctc tgggactacg aatgcttctg cacaccagct aatacaggtg aaaattgcac
481 agatgacaat cactgtgtaa gtaacccgtg tctgaatgga gccgtttgca catcgtccag
541 tgatggctac tcttgtgagt gcgcacaagg attccagggt gacacgtgca ataacgacat
601 caacgaatgc acaagaccaa atggtcccac ggtctgctac aacggtggga cgtgctttaa
661 ccagtacggg gggttccagt gcgagtgccc tttgggattc acgggagacc agtgtgagct
721 ggtatacgag ccatgctcgc cagacccgtg taggaacgga ggtcagtgcg cctcaactgg
781 accatacacc tttacatgta cctgccaaaa tgggtttacg ggagaaacgt gtgaattaaa
841 cctgaacgac tgcacccaac atcaatgctt gaatggcggg acatgcatcg atggagtcaa
901 tgactacaca tgttcttgtc tgaaagagtt cacaggtacc tattgcgaga tggattttga
961 tgaatgcgat actgcagttg atccctgttt caatggtggg acttgcagca acacctatgg
1021 taacttctcc tgcatatgcg tccggggatg ggaggggcaa acctgcgaga tcaacaaaga
1081 cgattgcacc cctaaccctt gccagtttga aggggagtgc gaggacagag tagcatcgtt
1141 caagtgtact tgcccgcccg gtcgtacagg tcttctgtgc catttggagg atgcgtgcat
1201 gagcaatcca tgccaccaca ctgcacagtg ctccacttcc gtggtggatg gttcatttat
1261 ttgcgattgt gccaccggtt accagggttt caattgctca gaggacatag atgaatgcag
1321 ccttagcatg gattctatat gtcagtctgg tggtacgtgt caaaactttg atggtgggtg
1381 gagttgctta tgcagctctg gctttactgg atcccgctgc gaaacggata ttgacgagtg
1441 tgacgacgac ccatgctaca atggaggaac atgcttaaat aaaaggggtg gctatgcgtg
1501 tatttgtctc acaggcttca ccggcactct gtgtgagact gacattaacg aatgctccag
1561 caatccttgt ctgaatgggg catcgtgctt tgacatcact ggaaggtttg aatgtgcatg
1621 cctggccggg tacaccggga ccacttgcca ggtgaacatt gacgactgtc aatcgtcgcc
1681 ctgtgagaac ggcggaacct gcatcgatgg ggtcaatcag ttcacttgtc tgtgcgagac
1741 aggttatgaa ggtcatcgat gcgaaatgga cagtgatgaa tgcgcaagca ggccctgtat
1801 gaatggcgga gtatgtgaag atttaattgg attttaccaa tgtaactgcc cagtcggcac
1861 ctcaggagac aattgtgagt acaaccacta tgactgcagt tccaacccct gcgtcaatga
1921 cggcacgtgt gtggacggca tcaatgagta cacttgtatg tgccatgaag gctacagagg
1981 actgaattgt gaggaggata ttgacgactg cgagtctcgc ccctgtcaca acggaggtac
2041 atgcgtggat gaagtcaacg ggtatcactg tctatgtccc attggctatc acgacccctt
2101 ctgcatgtcc aacatcaatg agtgctccag caatccttgc gttaatggcg gatcctgcca
2161 cgatggcgtc aacgaataca gctgcgaatg tatggccggg tataccggta cccggtgtac
2221 ggacgacttt gacgagtgct cctccaaccc gtgccagcac ggtggtacct gcgacaatcg
2281 acatgctttc tataactgca cttgccaggc aggctacacg ggcctcaatt gcgaggtgaa
2341 cattgacgac tgtgttgacg agccctgcct gaatggtggc atttgcattg acgaggtgaa
2401 ttctttccag tgcgtgtgtc cgcagacatt cgtcggactc ctatgtgaga cggaacggtc
2461 gccctgcgaa gacaatcagt gtcagaatgg agctacttgt gtgtactcag aagactatgc
2521 aggatactct tgtagatgca ccagtggttt ccaaggcaat ttctgtgatg atgaccgcaa
2581 tgagtgcctc ttctccccct gtcgcaatgg aggctcttgc acgaaccttg aaggatcctt
2641 cgagtgctcc tgtcttccgg gttatgatgg acccatctgt gagatcaaca tagacgagtg
2701 tgcttcggga ccctgcacca atggtggaat ctgcacagac ctcatcgacg actacttctg
2761 ctcctgtcag cggggattca caggcaagaa ctgccagaac gatactgatg aatgcctcag
2821 ttcgccttgc aggaacggcg ccacctgtca tgaatatgta gatagctata cgtgttcttg
2881 ccttgttggc ttcagtggca tgcactgcga gattaatgat caagattgta caacaagctc
2941 ttgtctctat ggtggtacct gcatcgacgg tgtcaacagc tacacctgcg agtgcgtgac
3001 cggttacact ggatccaact gccagattga gatcaacgaa tgcgattcgg acccctgtga
3061 gaacggggcc acctgccagg atcggtttgg gtcctactcg tgccactgcg atgtgggttt
3121 cacgggcctg aactgcgagc atgtggttca gtggtgcagt cctcagaaca atccatgcta
3181 caacggagct acctgcgttg caatgggcca cctttacgag tgccactgtg cctccaactg
3241 gatcggaaag ctctgtgatg tccccaaggt gtcctgtgat atcgcagcct cggataaaaa
3301 tgtaactcgg agtgaacttt gtttgaatgg aggaacatgc atcgatgcga caagcagtca
3361 ctcctgcctt tgtcaagacg gctacacagg atcctactgc gaagtgaata tcgacgagtg
3421 tgcttcggct ccatgccaca acggtggtac gtgcacagac ggtgtttaca gctacacttg
3481 ctcatgtctg cctgggttcg agggtccacg atgccaacag aacatcaatg aatgtgcttc
3541 aagcccatgt cacaacggcg gtcagtgcca cgacatggtc aatggctaca cctgctcatg
3601 tccagctggt acccaaggga cggactgctc catcaacttg gacgactgct acgaaggagc
3661 atgctaccac gggggagtct gcatcgacca agtcggcacg tacacctgcg attgccccct
3721 tgggtttgtc ggccagcact gcgaaggcga cgtgaacgag tgcctatcca acccttgcga
3781 tcccgttgga agccaggact gcgttcaact tatcaacaat taccagtgtg tctgcaagcc
3841 tggttatact ggccaagact gtgagcaaga gattcccaac tgccagaatg atccttgtca
3901 gaacaacgga ctttgcttac caagtgacga aggctattac tgcgactgcc tcagagggtt
3961 cactggtgtc cattgtgaaa caaagctcac accctgtggc acacaccctt gccagaatga
4021 aggcacctgc atggaatatg gcgatgactt tgatgactac acctgcatgt gcccctctgg
4081 tgtcagcggc gacaactgtg agatcgacta caatgagtgt gcttcctcgc cctgtatcaa
4141 tggaggcacc tgtctagacg agtatggtca gtatcgctgt gactgcccgg caacatggaa
4201 cggtcgcaac tgccacctgt ttgatccaac attcgcagga ggcattggca tggacccaga
4261 gatcccaacc gaacctccgg tgacgattcc catcactgta gcgaccacga cagaaccacc
4321 tcggtgctct caggaatgtc ttcggaagaa gggtgactac ttttgtgatg aggaatgcaa
4381 cactcatcta tgtgagtggg atggcaagga ctgctccttg aacctagacc catgggagaa
4441 ctgcactgct gccaacgttc catgctggaa ccgatttgga gatggcagct gcgacaggga
4501 atgcaacaac catggctgtc tctttgatgg ctttgactgc gtagatcaga agccagagga
4561 gtgtggggag gatgcattct gtcttgagcg ctacgggaat ggattctgcg atgaggaatg
4621 taacaacatt ggttgtctgt acgatgggct agattgcgaa gagaacccag agtttgcgca
4681 cggtgttctc atagtcgatg ttatgatccc ctatgcggag atgctcaccc tgaaccgctc
4741 ccagatgttc ctgcaagaca tgagcgttgt gctgaatacc gtcgtcctct tcgccccaac
4801 ggctgacaac cagaacaaga tcgagccctg ggagaatgac ccgagggccg tccgagcacc
4861 tgtcaggaga gatgttctgg ccgtgagcag ggaaggcaag ctgactgtca agaagaggca
4921 agccgagttg actccagatg atggcacaaa gtgcttcctg ttgcttgata actacaagtg
4981 ccatcaggat cggcccggca actgctttga gactgcagca gatgcagcag catacttggc
5041 agcattggtc accagccagc tcctccccac aagcctaccc attactggag ttggaagtga
5101 aactacccct gctcagacgg tcagcccgag tgttctcata gctgttgcca ttattggagc
5161 ctttgtgatt gctgctgcgt gcgtgatcgc aaggaagcgg ttccgaacaa acggcacgtg
5221 gttccccagc aactttgtcc gcacttcctc gaccaagtcc gaaaatccga aggtcccccg
5281 ggagtgtccg atcggcaacg agtctcctcc atctactatc tgctcatcta ttgatgctgg
5341 tgaagatgcc atgaatgcgt tagaatgcag agctcccaag agacaaagaa tctcccggct
5401 tagtcccgta gactatggtc agggccatac caccttagat acggacactc cttggatgac
5461 aatgacaagt aatggaccgc ttcatccctc tatggctcta acacctcctc gggaccagga
5521 acccccgttc atcaccaaca agggccctga cggtctgacc cccctcatgc tggccgtcat
5581 gcgttcgaag gcaagcatca ctgaccagga agaggaaacc catgcccact tcattgagga
5641 cctcatcacc agaggaggcg acatcaatca ccgaacggag acaaggggcg agactgctct
5701 tcacctggca gcgcggtaca acctcccagt tgctgccagg aagctcctgg agtattcggt
5761 gaacaccaac gctgaagaca atatgggaga gacaccgctg cacgccgctg tcagagctga
5821 tgccatcgag gtcttcaggc tgctgatcca gaacagatct actcagattg acgccaagac
5881 caaggctggg tacaccccga tgatcatcgc tgtccggcta atggtcgaaa acatggtgga
5941 agaacttgaa ctggccggcg ccgacactgc agctacagat aacgacggtc ggtctgcact
6001 aatgtgggct gcagctctca atcacctacc cgccttggag ttcctcctca agaagggttc
6061 caacaaggat ctgcaagaca atcaggaaca aacgcccctg ttccttgctg ccaaagaggg
6121 tcacgtgggg gccgtgaaaa tgctcctgga tcatggagca aaccgggaga ttacagatca
6181 tctggatatg tctccgagag agatcgccaa tagaatgagc cttcaggatg ttgtccgact
6241 cctggacacc tacagtatga tgagtcctgc tctcacacca aacagccacg tcaccagtcc
6301 catggacatg cataacggag agttgggcta ttccaacgga gccaaaccaa agaagaaacg
6361 gggcacaaat aaaaacggtg atgtgcggga gcgcgggaag gagaagagaa aggggaagaa
6421 gcggccaagt tcggacgagt ctttgccgcc gctggtaccg tcgcctccag aatcggtaga
6481 atcgcctcaa ggttataata gaactccacc tcccggaggt atttattcat tgcctgtgac
6541 gacgcagaat gtgatgatgc cgcaggatca ttatcaattg aaggaagttg cgaggcatgg
6601 gcaaggacca catgttgtag acatgcatcc aaacacgatc atgaatggta gattgtatgt
6661 ccctggtaac aacccaagcc cagccaaggg gtcgatggga ggagagaata tggacattcc
6721 aggagcttct gatttggtct cgcaaaccat ctggtctcca gaccatgcac tattgcaaaa
6781 ccagagatcg atgcatgacc cgaatgttat ggttccgggg actacgtcac aagccatggc
6841 catgatcagg caagctccaa gcacacagtc catgcagcag accttgagtc cagaagcccg
6901 tgactctagc ccaaaacctt gcaccatggt acctagtccc acaatctcca accaatacat
6961 catggcttcc agccctaatc tcccctccac aaccagtcaa gcaactcatt acgccagggc
7021 caacaacccc ttgtacgccg gcagccccca ccggggcaaa gtacctcagc aaatccacag
7081 catgtatcaa agccaaaata ggatgaaccc tcgtgcatgt atcagtgaat tgccaaacgg
7141 ccaccccaac tcgcctgaaa actgtatgca agagtacatg ataagagagc ctgaactctt
7201 aaaccctgcc aaacagagca tgtacgtggt gaacggcaag gtgccaaacg gccagcacag
7261 agacatccta tcagagaaga cgtccttctc aaatcctcat aataacaatg ggagcacagt
7321 ggatccttcc tgtacataca ccatggtagc tcacatgcct gatcactcct tcccaacacc
7381 ttcgccggaa tcacccagca agtggtccaa tccgtctccg acctctgcat cggattggtc
7441 ggggtcggag gccatctcaa gcccgccggt gcctccaaac cagcagcagg tcagcggtca
7501 agagctgatg aatgggcata ccggtaggtt actgactgga catgatatgc cactcggtat
7561 ctctttgcaa gggagctgca ctgaggtcgc gtatatctga acaatacctg tttcttacca
7621 ggtgatagag actctacttg aagaga
//