Section
I: Questions 1-10 (55pt total)
Fill in the
following sentences with all appropriate words from the list that follows.
Place only the chosen word(s) on your answer sheet. Words may be used more than
once. (15pt total)
Endoplasmic Reticulum, Golgi Apparatus, Mitochondria,
Nucleus,
Plasma Membrane, Sarcoplasmic Reticulum
1) The _______ is/are used
to store calcium within cells.
2) The endomembrane system
includes _______.
3) IDH can be isolated from
_______.
4) Eukaryotes differ from
prokaryotes in that they sequester genetic material within their _______.
5) Myocardial cells resume
normal contractions after moving cations across the _______.
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Short
Answers. Answer the
following in complete sentences. Where appropriate, include all calculations.
Calculations do not need to be in sentence format and diagrams may be
hand-drawn.
6) You were hired to prepare
solutions for the enzyme lab unit in Bio111. At your disposal you have prep
room equipment (flasks, beakers, graduate cylinders, balances) distilled water
and solid MgCl2 (MW 95.2).
a)
Explain how to make 250ml of a 6% w/v solution of MgCl2. (3pt)
b) What is the concentration of MgCl2 (in mM) of the solution in 6a? (3pt)
7) Name and define the role
each of the following substances play in the reaction studied in the first lab
unit. (2pt each)
a)
a-ketoglutarate
b)
IDH
c)
isocitrate
d)
NADP+
Bonus: Below is the structure of one of the
compounds used in lab unit one. Name the compound for +O.5pts
8) To examine the effect of
increased enzyme concentration on reaction rate you plotted "activity"
vs. "volume of enzyme". How did you determine activity? (What were
you actually measuring, why did it change, and how is that related to the
activity/reaction rate?) (5pt)
9) Linking 2 sugar
molecules, linking 2 amino acids, or adding a phosphate group to a protein all
require the same type of chemical reaction.
a)
Name and briefly
describe the chemical reaction that mediates all of these events. (4pt)
b) For each of the examples given in 9 name the specific
bond/linkage that results.
(ex. The bond found between 2 amino acids is called a
---- bond) (1pt each)
Bonus Draw the bond
found in each of the examples listed above. (0.5pt each)
10) You have discovered that
forms of earlobe cancer are related to expression of an abnormal form of a
kinase. The abnormal kinase is predicted to have a higher molecular weight than
the normal form of the kinase. You have isolated samples of both forms of the
kinase and are ready for further experiments.
a) What is a kinase? (4pt)
b) Describe an experiment that would demonstrate that
the abnormal kinase does, in fact, have a higher molecular weight than the
normal kinase. Be sure to indicate how you would be able to tell it was larger.
(3pt)
c) You decide to compare the earlobe cells you study
with bacterial cells and skeletal muscle cells. Hypothesize which of these
cells have the greatest and the fewest number of mitochondria. Briefly explain
your reasoning being sure to mention all 3 cell types. (4pt)
d) How could you collect data to test the hypothesis
made in 10c? (3pt)
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Section II:
Questions 1-4 (45pt total)
Answer all
of the following questions. Answers must be in complete sentences. Be careful
to answer the question that is asked. Brevity is encouraged.
1) When studying cellular communication it becomes
evident that the same signal can often cause very different responses in
different cells. Why is this the case? Provide an example that illustrates at
the molecular level how these 'differential responses' help the organism
function correctly. (10pt)
2) How is a membrane potential generated? Discuss the
types of ion channels that act to change the membrane potential of a
neuron. ('Types' refers to general class of channelà the ion that passes through the channel may be
included as an example) Why might a neuron have evolved this sort of signaling
within the cell? (15pt)
3) In biology the 'form' of a compound is intimately
related to its function. This is the case in fertilization where sperm triggers
the conversion of an egg cellular component into second messengers. Describe
the general structure of the cellular component and the second messengers that
result. How do these structures dictate where in the cell the second messengers
will be used? (10pt)
4) Calcium is involved in many cellular communication
systems. Using one example system from this unit describe how the cell controls
the levels of calcium in response to a signal, what the change in calcium
levels causes and how the cell returns to 'resting' concentrations of calcium.
Limit your discussion to the cellular events that directly involve calcium, its
levels or use. (Do not include all steps in the pathway). (10pt)