• Descriptions
• Research
• Pedagogy

Kushner, D.B. 2007. DNA Microarrays in the Undergraduate Microbiology Lab: Experimentation and Handling Large Datasets in as Few as Six Weeks. J. Microbiol. & Biol. Educ. 8:3-12.

Campbell, A.Malcolm, Mary Lee S. Ledbetter, Laura L. M. Hoopes,Todd T. Eckdahl, Laurie J. Heyer , Anne G. Rosenwald, Edison Fowlks, Scott Tonidandel, Brooke Bucholtz*, and Gail Gottfried. 2007. Genome Consortium for Active Teaching: Meeting the Goals of BIO2010. CBE: Life Sciences Education. Vol. 6: 109 –118.

Campbell, A.M., T.T. Eckdahl, E. Fowlks, L.J. Heyer, L.L. Mays Hoopes, M.L. Ledbetter, A.G. Rosenwald. 2006. Genome Consortium for Active Teaching (GCAT). Science. 311, 1103-1104.

2004 PKAL F21 Statement
by Ben B. Whitlock
PKAL Essay.

Implications of the NIH Roadmap for Undergraduate Life Sciences Education: A Research Scientist Springboard Program. Juniata College (August 8-10, 2004)

AAAS Poster, Seattle February 2004. Presented by Steven Verhey

Washington University Biology Department - A model for distributed learning (March 2004)

HHMI Program Directors Meeting in 2003

American Society for Microbiology 2002 Annual Meeting Education Session on GCAT. Outline of talk and electronic presentations by all five speakers.

Genomics Course Resources - ASCB Annual Meeting presentation by A. Malcolm Campbell (poster in PDF, 4.4 MB)

Meeting Report: Genomics in the Undergraduate Curriculum—Rocket Science or Basic Science?
by A. Malcolm Campbell
Cell Biology Education. Vol. 1: 70–72. 2002

Expanded options for GCAT in years to come (2000 ASCB meeting presentation by A. Malcolm Campbell)

Launching GCAT at the 1999 annual meeting of the American Society for Cell Biology.

 

2008

Todd T Eckdahl, Adam D Brown*, Steven N Hart*, Kelly J Malloy*, Martha Shott*, Gloria Yiu*, Laura L Mays Hoopes, and Laurie J Heyer. Microarray analysis of the in vivo sequence preferences of a minor groove binding drug. BMC Genomics. 2008. 9 (32): pp to be announced.

Gloria Yiu*, Alejandra McCord*, Alison Wise*, Rishi Jindal*, Jennifer Hardee*, Allen Kuo*, Michelle Yuen Shimogawa*, Laty Cahoon*, Michelle Wu*, John Kloke*, Johanna Hardin, and Laura L. Mays Hoopes. Pathways Change in Expression During Replicative Aging in Saccharomyces cerevisiae. J Gerontology. January, 2008. Download data set.

Christine A. White-Ziegler, Suzin Um*, Natalie M. Pérez*, Abby L. Berns*, Amy J. Malhowski*, and Sarah Young*. Low temperature (23 °C) increases expression of biofilm-, cold-shock- and RpoS-dependent genes in Escherichia coli K-12. Microbiology. 154: 148-166. 2008.

Nick S. Netzel*, Jillian L. Wisb*y, Pamela A. Marshall. 2008. Determining Compensatory Mechanisms for Loss of Vacuolar Function in Saccharomyces cerevisiae. Arizona Nevada Academy of Sciences 52nd Annual Meeting.

Nick S. Netzel*, Jillian L. Wisby*, Pamela A. Marshall. 2008. Determining Compensatory Mechanisms for Loss of Vacuolar Function in Saccharomyces cerevisiae. Arizona State University West campus New College Student Research & Creative Projects Expo.

 

2007

Madison M. Stevens*, Gary P. Lutz, and Consuelo J. Alvarez. Gene expression of Sacharomyces cerevisiae exposed to commercial wood preservatives by Microarray analysis. NCUR 21st conference at San Rafael , CA on April 12, 2007.

White-Ziegler, Christine A., Amy J. Malhowski*, and Sarah D. Young*. Human body temperature (37° C) increases the expression of iron, carbohydrate, and amino acid utilization genes in Escherichia coli K-12. Journal of Bacteriology. 2007. Vol. 189(15): 5429-40.

K.A. Haynes, M.L. Broderick*, A.D. Brown*, T.L. Butner*, L. Harden*, L. Heard*, E. Jessen*, K. Malloy*, B. Ogden*, S. Rosemond*, S. Simpson*, E. Zwack*, A. M. Campbell, T. Eckdahl, L.J. Heyer and J.L. Poet. 2007. Computing with living hardware. IET Synth. Biol. 1: (1–2), pp. 44–47.

Belanger KD, Tkachev D*, Geier SJ, Belanger KG, Aurora R. “Examination of the Role of Regulated Nuclear Transport in the Response to Oxidative Stress in S. cerevisiae.” Washington University Systems Biology Workshop, St. Louis, MO. August 2007.

Belanger KD, Tkachev D*, Belanger KG, Geier SJ, Aurora R. “The karyopherin Sxm1/Kap108 regulates gene expression under normal and oxidative stress conditions in S. cerevisiae.” American Society for Cell Biology Annual Meeting. Washington, DC. December 2007.

Mark P. Hamilton*, Padma Swamy*, Sun K. Park* and Lance F. Barton. Dynamic proteasome regulation by PA28γ-dependent and ubiquitin-dependent mechanisms. Department of Biology, Austin College, Sherman, TX. 36th Annual Autumn Immunology Conference, Chicago, IL Novermber 16-19, 2007. abstract 65.

 

2006

Alison Wise*, Jo Hardin, Laura Hoopes. Yeast through the ages: A statistical analysis of genetic changes in yeast aging. Chance (Publication of the American Statistical Association) 19 (3): 39-44, 2006. Cover article.

Johanna Hardin, Laura Hoopes, and Ryan Murphy*. Analyzing DNA Microarrays with Undergraduate Statisticians. ICOTS 7 (2006) 13E: 1-5.

 

2005

An Inexpensive Gel Electrophoresis-Based Polymerase Chain Reaction Method for Quantifying mRNA Levels
by William D. Bradford, Laty Cahoon, Sara R. Freel, Laura L. Mays Hoopes, and Todd T. Eckdahl.
Cell Biology Education. Vol. 4: 157–168. 2005.

MAGIC Tool: integrated microarray data analysis
by L. J. Heyer, D. Z. Moskowitz, J. A. Abele, P. Karnik, D. Choi, A. M. Campbell, E. E. Oldham and B. K. Akin.
Bioinformatics. Vol. 21 ( 9): 2114–2115. 2005.

Resetting of the Replicative Aging Clock in Saccharomyces cerevisiae During Meiotic Prophase
by S. L. De Santiago, L. Cahoon, M. Y. Wu, K. Lancaster, M. McFarlane, J. Hardin, B. Rockmill, L. L. M. Hoopes. Pomona College, Claremont, CA, and Yale University, New Haven, CT.
(Presented at the American Society for Microbiology, 2005 annual meeting).

DNA Microarray-Generated Transcriptome Profile of Saccharomyces cerevisiae Lacking the Tyrosine Phosphatase SIW14
by N. K. Minkah, B. J. Tiede, D. B. Kushner. Dickinson College, Carlisle, PA.
(Presented at the American Society for Microbiology, 2005 annual meeting).

Identification of Bacterial Species Using 16S rRNA Microarray Technology
by J.C. Pierce, K. Patel, R.Khan, R. Shah, J. Greenwood, and A.S. Wenocur. University of the Sciences in Philadelphia
(Presented at the American Society for Microbiology, 2005 annual meeting).

Diferentiation of Human Promyelocytic Leukemia Cells: A DNA Microarray Analysis.
by Michael Roberts, Tasha Kouvatsos and Benjamin Tiede. Dickinson College, Carlisle, PA.
(Presented at the American Association for Cancer Research, 2005 annual meeting).

 

2004 and earlier

Microarray Analysis of SIR2 Effects on Yeast Gene Expression
by M. Yuen, M. Wu, L. L. Mays Hoopes. Pomona College, Claremont, CA
(Presented at the American Society for Cell Biology, 2002 annual meeting).

Discovering proteins involved in the Saccharomyces cerevisiae aging process using genome-wide analysis with microarrays.
by Kuo, A, Yuen, M, Wu, M, and Hoopes, LLM. Pomona College, Claremont, CA
(Presented at the American Society for Microbiology, 2003 annual meeting).

Microarray Analysis of Yeast Aging to 12 Generations
by Laura L. Mays Hoopes, Rishi Jindal, Jennifer Hardee, Michelle Wu, Michelle Yuen Shimogawa, Allen Kuo, and Johanna Hardin.
(Presented at the Miami Symposium, January 2004.)

Microarray analysis of early aging in yeast.
by Jennifer Hardee, Rishi Jindal, Michelle Wu, Michelle Yuen Shimogawa, Allen Kuo, Laty Cahoon, Johanna Hardin, Laura L. Mays Hoopes. Pomona College, Claremont, CA.
(Presented at the Yeast Genetics and Molecular Biolgy Meeting, 2004.)

David E. Walker*, Gary P. Lutz, and Consuelo J. Alvarez. 2008. Development of a Cross-Disciplinary Investigative Model for the Introduction of Microarray Techniques at Non-R1 Undergraduate Institutions. CBE: Life Sciences Education. 2008 Spring; 7(1) :118-31.

Campbell, A.Malcolm, William T. Hatfield, and Laurie J. Heyer. 2007. Letter to the Editor: Make Microarray Data with Known Ratios. CBE: Life Sciences Education. Vol. 6: 196 - 197.

Campbell, A.Malcolm and Barbara Lom. 2006. A Simple E-Mail Mechanism To Enhance Reflection, Independence, and Communication in Young Researchers. CBE: Life Sciences Education. Vol. 5, 318–322.

Campbell, A.Malcolm, Carolyn A. Zanta, Laurie J. Heyer, Ben Kittinger*, Kathleen M. Gabric, and Leslie Adler. 2006. DNA Microarray Wet Lab Simulation Brings Genomics into the High School Curriculum. CBE: Life Sciences Education. Vol. 5, 332–339.

How Golden is Silence? Teaching Undergraduates the
Power and Limits of RNA Interference. by Natalie H. Kuldell.
CBE: Life Sciences Education. Vol. 5, 247–254. 2006.

The Microarray Revolution: Perspectives from Educators
by Jay L. Brewster, K. Beth Beason, Todd T. Eckdahl, and Irene M. Evans.
Biochemistry and Molecular Biology Education. Vol. 32 (4): 217–227. 2004.

Meeting Report: Synthetic Biology Jamboree for Undergraduates.
by A. Malcolm Campbell
Cell Biology Education. Vol. 4: 19–23. 2005.

Open Access: A PLoS for Education
by A. Malcolm Campbell
PLoS Biology. Vol. 2 (5): 560-563. 2004.

Public Access for Teaching Genomics, Proteomics, and Bioinformatics
by A. Malcolm Campbell
Cell Biology Education. Vol. 2: 98–111. 2003