2011 GCAT Synthetic Biology Workshop
One Session; 15 pairs of faculty
June 16 - 18
Missouri Western State University, St. Joseph, MO





Workshop Goals


Only For Faculty at American Institutions

GCAT is please to announce a new synthetic biology faculty workshop for the summer of 2011 hosted by Missouri Western State University (MWSU). This workshop is funded by GCAT. You can learn more about synthetic biology from GCAT. Since its inception, GCAT has encouraged faculty from Minority Serving Institutions (MSIs, such as HBCUs, HSIs, TCUs, etc.) to attend its workshops. Also, faculty from underrepresented minorities are also encouarged to participate in GCAT activities.

The goal of this workshop is to prepare 15 pairs of faculty to spend the 2011-12 academic year getting ready for undergraduate-lead research in synthetic biology during the summer of 2012. We will train participants how to do the wet lab methods and how to think differently to prepare for synthetic biology. By the end of the workshop, we want each team to have mapped out possible research projects and implementation plans.

Participants will NOT have to pay anything to attend with the possible exception of some travel expenses (still working on this aspect of the budget: what happens with the economy and fuel prices?).

The dates are:
Arrive in St. Joseph, MO Wed. June 15
Workshop all day Thursday and Friday June 16-17
Workshop until noon on Saturday June 18 and departure after that.

• Instructors will be Drs. Jeff Poet and Laurie Heyer (mathematicians) as well as Todd Eckdahl and Malcolm Campbell (biologists).
• 15 teams of two faculty members from 15 different schools
• Each team would be composed of a biologist and a non-biologist (chemist, mathematician, computer scientist, perhaps biochemist if in different department, etc.)
• Teams would apply no later than January 15, 2011 and be notified of their selection before February 1, 2011.
GCAT funds will pay for room and board on campus in dorms with single rooms and shared bathrooms.
• Food at Commons which is really good cafeteria food.
• Lab supplies all provided free of charge. Computers will be available but participants are encouraged to bring laptops if they can.

We hope that all 15 schools will have their students present their research in the summer of 2012 at research venues to be discussed at the workshop. A tentative schedule is attached.

Email applications to: Jeff Poet: poet@missouriwestern.edu

Put "GCAT Synthetic Biology Workshop" in the Subject line of the application e-mails. You will get a confirmation email when the application is received. If you do not get a confirmation, then contact Jeff Poet again.

APPLICATION RECEIPT DUE DATE: 5 pm eastern time, JANUARY 15, 2011.
GCAT does not have quotas for workshop participation. We encourage all faculty to apply but we will emphasize the potential impact for faculty who teach at MSIs, or those faculty members who are themselves members of underrepresented groups.

Only For Faculty at American Institutions

Download Workshop Application

Email Malcolm Campbell with Questions

See photos from 2003 workshops

See photos from 2004 workshops

See photos from 2005 workshops

See photos from 2008 workshops

See photos from 2009 workshops

This workshop is supported by GCAT. Much of the background work was supported by a grant from the National Science Foundation under Grant No. DBI-0627478. Any opinions, findings, and conclusions or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation or HHMI.

Synthetic Biology Workshop June 2011
Tentative Schedule

Day 1 – June 16, 2011
7:00 – 8:15 Breakfast

8:30 Overview What is synthetic biology?
How is synthetic biology suited for multidisciplinary research with undergraduates?
What are the goals of the workshop?

9:30 Introduction of BioBrick assembly scheme, Registry
Give assignment to participants

10:30 Break

11:00 Synthetic biology project examples
Presentations on medicine, energy, the environment, technology

12:00 Lunch

1:00 Explore the iGEM Wiki
Work as pairs of participants, describing past iGEM projects in area of interest

2:00 Report iGEM project examples explored above (What makes the above project “synthetic biology”?)

3:00 Break

3:30 Wet lab work
Discuss methods for obtaining Registry parts or building new parts
Start PCR for building a new part
Use Oligo assembly web site
Pipet and boil oligos for assembly of new part

Evening Synthetic Biology research presentation based on MWSU and DC students

Day 2 – June 17, 2011
7:00 – 8:15 Breakfast

8:30 Reflections on previous day, feedback on workshop so far and goals for Day 2

9:15 Birds of a Feather discussions – what issues do you see at this point?

10:00 Discussion of ethical issues related to synthetic biology

10:30 Break

11:00 Participant pairs work on their plans for synthetic biology at their institution
Brainstorm area of focus, understand overlapping interests, project ideas

12:00 Lunch – Bioethicist will join us for lunch.

1:00 Discuss lab methods and practices,
Wiki, GCAT-alog, sharing protocols online

2:00 Lab work
Load PCR products on gel
Ligate oligo assembly
Transform parts from mini-Registry and oligo assembly
Take gel pictures

3:20 Break

3:40 Work in pairs on topics for project presentation/discussion/ AMC, LH, TE, JP consulting

5:15 Announce topic of choice to whole group (from which we create two groups for Day 3 report)

Evening Presentation by NSF Program Officers

Day 3 – June 18, 2011
7:00 – 8:15 Breakfast

8:30 Observe colonies and discuss results

8:50 Group Photo and assessment data collection

9:15 Divide into two groups based on participant project topics
Allow 20 minutes for each pair for presentation/discussion/feedback

10:30 Short Break

12:00 Participants leave with optional box lunch

Short-Term Outcomes of GCAT Synthetic Biology Workshop

1) Everyone will learn as much as possible. We will all have fun, and the participants will begin a new phase in their teacher-scholar career.
2) Participants will learn some vocabulary and a new perspective that makes synthetic biology distinct from genetics and molecular biology.
3) Interdisciplinary teams will explore an area of common interest and investigate feasible projects for undergraduate research and possible course development.
4) Participants will develop a strategy to recruit and support undergraduates for research in synthetic biology.
5) Faculty from different departments will collaborate to find common ground, mutual understandings from different perspectives, and a shared vision of how to start a new research adventure.

Long-Term Outcomes of GCAT Synthetic Biology Workshop

1) Participants will apply what they learn to develop an undergraduate research program in synthetic biology.
2) Participants will assemble multidisciplinary teams consisting of at least two faculty and two or more students from at least two different majors.
3) Faculty from outside biology will utilize the methods they learned to help design, construct, and test DNA-based devices as part of a synthetic biology research project.
4) Biology faculty will learn the language and tools of the trade from their partner’s discipline to a level of proficiency that they can help design, construct, and test a model of the device as part of a synthetic biology research project.

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© Copyright 2011 Department of Biology, Davidson College,
Send comments, questions, and suggestions to: macampbell@davidson.edu